rs28291546 SNP Detail

Summary

• ID
  rs28291546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140545298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG GCACTGTCTT TGGTCAGCCA
  Y
  ATCCCTTCTT AGACCTGGGC CACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ
ss37788177	NES09140043	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C		T	C
ss147714119	ENSMUSSNP6083928	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ
rs28291546					SNP	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788177	NES09140043	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140545298 () rs orientation: forward

Symbol	Name	Function Class
Gm13032	predicted gene 13032	476 bp downstream
Padi1	peptidyl arginine deiminase, type I	Intron
Rr603557	regulatory region 603557	893 bp distal
Rr603558	regulatory region 603558	391 bp distal