rs28291550 SNP Detail

Summary

• ID
  rs28291550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140545132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC TTACTGAAAC ACTCTGACGA
  R
  CCCCTGTCAT TTTAGCATAC TGCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37788181	NES09140038	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G		A	G	A	G	A
ss147714083	ENSMUSSNP3103950	ENSEMBL	ENSEMBL_Sanger	f	SNP	G					A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28291550					SNP	G	A	A	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788181	NES09140038	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140545132 () rs orientation: forward

Symbol	Name	Function Class
Gm13032	predicted gene 13032	310 bp downstream
Padi1	peptidyl arginine deiminase, type I	Intron
Rr603557	regulatory region 603557	727 bp distal
Rr603558	regulatory region 603558	225 bp distal