rs28291566 SNP Detail

Summary

• ID
  rs28291566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140543033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGTCTC TGTCTCTCCT
  CCTCCCTCTT CTCACATGAC CCAGCTCAGG AAGGGTCTGT TCACTCTGGC TATATGCTCC
  CTTTTATCTA AAAAACAAAA CAAAAACCAA AAACTCCCTT TTATCTCTGC CACGTTTAGG
  AGCAGTCATA TCTCCTGTGT GTGTGTGTGT ATGTGTGTGT GTGTATCTTT CACTCACTAG
  Y
  GTGGCGACAC CTCTGCAGTA CACAGCTTGC CTGGCTGTTC ACAGCATCCT GTTAGTCCTC
  AGCCCTTACT GAGAATCCGT GTACTCCAGA AAGGTCATCC CTAAATCTCA CAGTCCTCCC
  CACCCCCTGC CCCGGGGTTG TGGTTCAGAC AGGTCAAGTA ACATTACCAA GGTCACAAAA
  ACTTGTTGCC CACTCCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788197	NES09140141	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C	C	C
ss147713896	ENSMUSSNP2245333	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291566					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788197	NES09140141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140543033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	789 bp distal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	within coordinates
Rr603557	regulatory region 603557	within coordinates
Rr603558	regulatory region 603558	1853 bp proximal
Tssr44282	transcription start site region 44282	1554 bp upstream