rs28291573 SNP Detail

Summary

• ID
  rs28291573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140541667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGGCCT GAGGTCCTTT
  GGGAAGAAGG ACGCCCCAAA TCTTCCTTTA CATCTTACGC AATCCAGGAG TCATATGAAA
  CCACGGTGCT CTTGCCCCAG GGTCCTGGCA AGGTGGGCAT TTCGTTCCAG AGCTATTTTT
  CTCGGGTTTC AGAGAGGTGG AGGGTTGGGG GTGGGACAGC TCAAAGTGGG GCGTGGCTGC
  R
  GAGGCCACAC CTTGAACAGG CTCAACTTCC GGCCTTGACC CTCTCAGGGC TCTAGCTGGG
  AATGGGAGAA GGAAAAGTGG CGATAGTCTC CAGGGCAGGG CAGGCGACTC CAGGAACGAA
  GAAGTGTGTT GTCCTCCTGG CGCTCAGCTG ACCACAGTAG CCAGCCCACT TTCAGGCCCA
  AGGAGGGTGG AGGCTGGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788204	NES09140216	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291573					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788204	NES09140216	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140541667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	244 bp proximal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	within coordinates
Rr603555	regulatory region 603555	1386 bp distal
Rr603556	regulatory region 603556	1698 bp distal
Rr603557	regulatory region 603557	1190 bp proximal
Tssr44282	transcription start site region 44282	188 bp upstream