rs28291577 SNP Detail

Summary

• ID
  rs28291577
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140541421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGGCTGCT CCGGCAGGTA ACGAGCATCC TGCAGAGGTC
  GGACTGGATG GAGTTGAGCA TTAGAGGGGC TTTTGTGCCT GCTCGCTTTC AAGGACTGAG
  W
  TTTCCTGCCC TTGCTTGCCT CCGTTGAACT GAACGGTGCC AGAGGGCCAT GGCCTGAGGT
  CCTTTGGGAA GAAGGACGCC CCAAATCTTC CTTTACATCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37788208	NES09140212	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291577					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788208	NES09140212	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140541421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	490 bp proximal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	within coordinates
Rr603555	regulatory region 603555	1140 bp distal
Rr603556	regulatory region 603556	1452 bp distal
Rr603557	regulatory region 603557	1436 bp proximal
Tssr44282	transcription start site region 44282	28 bp downstream