rs28291579 SNP Detail

Summary

• ID
  rs28291579
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140540611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCGCCTG TCTCCTCTCC
  TCTTCAGAGG TCGGGCATCG CCCCAACCCT TCTCATCCTC CTTTATCTTC TTCTTCTCCT
  TCTCCGTGTC TCAGCTGCAG CCGGGCCATG CTCATAGAGG AGGCTGTTCG TGCAGAGAGC
  CTACAAATGG GGTTCCAGTT CCACAGACCC TTCTGGAAGG GGGAAGAGCC AATGCCTACT
  W
  GGCCATGCCT AGCCTAACAC TTTCATGGAA GCCTTCGCTA ACTGAGTGTC CGCCGGTTAT
  GAAGTGACAG CAGCTGCCTC AAGTCTGGGG TGGCACCAGA AACTACTAAA AATACCAAGA
  CAGAATCCAG TGGCCTGTGG TGGCTCCTGG ACCACAGGAG GAAGATGGCA GGCCTCTGCC
  AGCCATGCCC TGCAGCTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37788210	NES09140210	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs28291579					SNP	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788210	NES09140210	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140540611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	1300 bp proximal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	within coordinates
Rr603555	regulatory region 603555	330 bp distal
Rr603556	regulatory region 603556	642 bp distal
Tssr44282	transcription start site region 44282	838 bp downstream