rs28291580 SNP Detail

Summary

• ID
  rs28291580
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140540578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA TGGGGTTCCA GTTCCACAGA
  M
  CCTTCTGGAA GGGGGAAGAG CCAAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37788211	NES09140209	PERLEGEN	MM_PANEL2	f	SNP				A		A	A	C
ss45635419	mCV24067180	ABI	CRAMUS_MOUSE	f	SNP	A	C	C		A
ss147713838	ENSMUSSNP5752539	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs28291580					SNP	A	C	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788211	NES09140209	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140540578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	1333 bp proximal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	within coordinates
Rr603555	regulatory region 603555	297 bp distal
Rr603556	regulatory region 603556	609 bp distal
Tssr44282	transcription start site region 44282	871 bp downstream