rs28291584 SNP Detail

Summary

• ID
  rs28291584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140539921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGAGTG GGTAAGCATC
  CTCCAAGGGT GCTGGCACAT TGTGCTGGGG ACCTGATGAG CCTTGTGCTA AAATGTCTGT
  CAAAGGGAAT AGTCTGAGAT CACAGCAAGT GTGTAAGATG AAAAGAAGCG ATGTTTCCGA
  AGATCAGACC ACCAGGCCTA GGGAACTCAG CACCGGAGTC AGGGCTACGG AATTGCGTTG
  R
  CCTGTCCTGG ATCCCGGTGC CTTGGAGCAT CGCCCCCTTC TGCCAGCCTC CCCACCTCTT
  TCCATAAAAC CAAGGGAAGA GGAGAGGAAG AGGAAGAGGA AGAGGCAGGT CCCTCCTCGA
  TAGTATCTCA GGCAGGCGGG GGGGGGGGGG GCGGCGCGGG GGAGTGGCCA TGGATCAAGG
  ATTCTGTCGA ATCAGCGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37788215	NES09140205	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28291584					SNP	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788215	NES09140205	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140539921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	1990 bp proximal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	373 bp downstream
Padi3	peptidyl arginine deiminase, type III	1962 bp upstream
Tssr44281	transcription start site region 44281	1961 bp upstream
Tssr44282	transcription start site region 44282	1528 bp downstream