rs28291585 SNP Detail

Summary

• ID
  rs28291585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140539909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGGATGG GTGGAAAGAG
  TGGGTAAGCA TCCTCCAAGG GTGCTGGCAC ATTGTGCTGG GGACCTGATG AGCCTTGTGC
  TAAAATGTCT GTCAAAGGGA ATAGTCTGAG ATCACAGCAA GTGTGTAAGA TGAAAAGAAG
  CGATGTTTCC GAAGATCAGA CCACCAGGCC TAGGGAACTC AGCACCGGAG TCAGGGCTAC
  R
  GAATTGCGTT GACCTGTCCT GGATCCCGGT GCCTTGGAGC ATCGCCCCCT TCTGCCAGCC
  TCCCCACCTC TTTCCATAAA ACCAAGGGAA GAGGAGAGGA AGAGGAAGAG GAAGAGGCAG
  GTCCCTCCTC GATAGTATCT CAGGCAGGCG GGGGGGGGGG GGGCGGCGCG GGGGAGTGGC
  CATGGATCAA GGATTCTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37788216	NES09140204	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28291585					SNP	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788216	NES09140204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140539909 () rs orientation: forward

Symbol	Name	Function Class
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	385 bp downstream
Padi3	peptidyl arginine deiminase, type III	1950 bp upstream
Rr603553	regulatory region 603553	1595 bp distal
Rr603554	regulatory region 603554	1473 bp distal
Rr603555	regulatory region 603555	within coordinates
Rr603556	regulatory region 603556	39 bp proximal
Tssr44281	transcription start site region 44281	1949 bp upstream
Tssr44282	transcription start site region 44282	1540 bp downstream