rs28291588 SNP Detail

Summary

• ID
  rs28291588
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140539552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTG CACCAGTCGG AGGCTGACAT
  K
  TGGAGCCTAT GACTGTCCCC TCTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37788219	NES09140201	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	T		G	G	G	T
ss147713812	ENSMUSSNP5623709	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs28291588					SNP	G	T	G	T	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37788219	NES09140201	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140539552 () rs orientation: forward

Symbol	Name	Function Class
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	742 bp downstream
Padi3	peptidyl arginine deiminase, type III	1593 bp upstream
Rr603553	regulatory region 603553	1238 bp distal
Rr603554	regulatory region 603554	1116 bp distal
Rr603555	regulatory region 603555	within coordinates
Rr603556	regulatory region 603556	396 bp proximal
Tssr44281	transcription start site region 44281	1592 bp upstream
Tssr44282	transcription start site region 44282	1897 bp downstream