rs28291841 SNP Detail

Summary

• ID
  rs28291841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134292436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTCAGAA ACCGTCAGGC
  TTGCTGCTGC TTTTCTCTAC ATCCAACACG GGCTCCCTTC TGCCCTGAGG ACCAACATAA
  GCACCAAACA TTTGGCCTTT GAGGGTCATG AACCTCAGGG AAGCAAGGCC CTGGCTGAGT
  CCTGAGGCCT AACTGTAAGC AGTCTCCCAC CTGAACTGTG TGCTGCCAGG ATAGCCTGTC
  Y
  CCAAAGCAGG TGACCCTTGT TGGCATGGGC ACAAAGGCTT GTGGAAAGAG GGAAAAAAGG
  ACCTATCAGA GAATTTTCTG GAAGCACTAC CCTAGTCTTC TCCATTTACC CCTATGTGGT
  ACTTTAAATA AGAATGGCCC CACAGGCTCA TCTATTTGAA TGCAGAGAGA ATGGAACTTT
  TTGAGAAGGA TAAGGAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37761165	NES09154012	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291841					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761165	NES09154012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134292436 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	within coordinates
Rr86156	regulatory region 86156	1365 bp proximal
Rr102855	regulatory region 102855	1766 bp proximal
Tssr43917	transcription start site region 43917	1796 bp upstream
Tssr43918	transcription start site region 43918	1773 bp upstream
Tssr43919	transcription start site region 43919	1735 bp upstream
Tssr43920	transcription start site region 43920	1687 bp upstream
Tssr43921	transcription start site region 43921	1671 bp upstream
Tssr43922	transcription start site region 43922	1636 bp upstream