rs28291842 SNP Detail

Summary

• ID
  rs28291842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134291984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGGCCTG ACCCAGGAAG
  AGCTGTACTC ACTTCAGCGT CTCAGCCAGG AAGAAGCTCT GTTGCCTGTT GTCATGGTTG
  GGGTTACTGC TGTACACGTC CTGGATCCCC GAGAAGCCGG CTTCCGTCCG ACAGTGTTTC
  TCCAGGGCCT GGAGGAAGGG AGCAGCGGCC TTAGTGTGGG GAGGAGATGC CTGGTGGTTG
  R
  AGCTCAATAG CCCTCAGGTC CCAACTCTTG GCTGGCACAT AGGGGTCCAG CTACGGCCTT
  CTTCCCAGGA TCAGCCTGCC CACTCTGCCT TCGCTTGTGT TGAGAACTCA GCTCGGATGC
  TTTCCTAGGT AACTAAGCAA TTCCCTGGTC TGAGACCTGC CTGGGCTTCT CCGCCTTCCA
  GGGACTTGGG TGACCTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37761166	NES09154011	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G	G	G	A	G	G
ss45721841	mCV24789223	ABI	CRAMUS_MOUSE	f	SNP		A	G						G
ss147535322	ENSMUSSNP4015121	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291842					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761166	NES09154011	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134291984 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	within coordinates
Rr86156	regulatory region 86156	1817 bp proximal
Tssr43917	transcription start site region 43917	1344 bp upstream
Tssr43918	transcription start site region 43918	1321 bp upstream
Tssr43919	transcription start site region 43919	1283 bp upstream
Tssr43920	transcription start site region 43920	1235 bp upstream
Tssr43921	transcription start site region 43921	1219 bp upstream
Tssr43922	transcription start site region 43922	1184 bp upstream