rs28291844 SNP Detail

Summary

• ID
  rs28291844
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134291786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC TGCTTGCGAC TCCTGAGCTG
  H
  GGGCCTGACC CAGGAAGAGC TGTAC                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37761168	NES09154009	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		C	A	A	C	C	A	C	A
ss45666653	mCV24789224	ABI	CRAMUS_MOUSE	f	SNP	T	A					A		A
ss147535317	ENSMUSSNP3596048	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A							A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28291844					SNP	T	A	A	A	A	A	A	C	A	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761168	NES09154009	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134291786 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	Intron
Rr601742	regulatory region 601742	within coordinates
Tssr43917	transcription start site region 43917	1146 bp upstream
Tssr43918	transcription start site region 43918	1123 bp upstream
Tssr43919	transcription start site region 43919	1085 bp upstream
Tssr43920	transcription start site region 43920	1037 bp upstream
Tssr43921	transcription start site region 43921	1021 bp upstream
Tssr43922	transcription start site region 43922	986 bp upstream