rs28291845 SNP Detail

Summary

• ID
  rs28291845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134291782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATGACA GGTGGACAGG
  CCCAATGGTA CTCAGCAGCC GTGTCACATG GCGGAAGAGT GGCAAACGAC CAGGTGAAAG
  GGTTTGGGAA ACTCCTGCTG TGGTCAAAGA TGGGGATCTT GGCCACAGCT CAACCTACTG
  TGAAGCCCTG GGGACCCCAA GCCTCTGCCC CCATGTGGGC TCCCTGCTTG CGACTCCTGA
  R
  CTGAGGGCCT GACCCAGGAA GAGCTGTACT CACTTCAGCG TCTCAGCCAG GAAGAAGCTC
  TGTTGCCTGT TGTCATGGTT GGGGTTACTG CTGTACACGT CCTGGATCCC CGAGAAGCCG
  GCTTCCGTCC GACAGTGTTT CTCCAGGGCC TGGAGGAAGG GAGCAGCGGC CTTAGTGTGG
  GGAGGAGATG CCTGGTGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37761169	NES09154008	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	A	G	G
ss45628166	mCV24789234	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291845					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761169	NES09154008	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134291782 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	within coordinates
Tssr43917	transcription start site region 43917	1142 bp upstream
Tssr43918	transcription start site region 43918	1119 bp upstream
Tssr43919	transcription start site region 43919	1081 bp upstream
Tssr43920	transcription start site region 43920	1033 bp upstream
Tssr43921	transcription start site region 43921	1017 bp upstream
Tssr43922	transcription start site region 43922	982 bp upstream