rs28291851 SNP Detail

Summary

• ID
  rs28291851
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134291535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGGGCAG TGACACAGCT GGGCTCTGGG AACTCTAGCC
  TCTGGCCGGG ACTCACTAGA AGGGACCACC AGAGCAAGGC ACAGCTCAGG ACTCAGAGCA
  R
  CAAGGGAAGC AGGCAGGAGA CTGCCAAGCG CTCCAAGCTG GGCTGCAGAG ATGACAGGTG
  GACAGGCCCA ATGGTACTCA GCAGCCGTGT CACATGGCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37761175	NES09154002	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	A	G		G	G	G	G		G
ss45582026	mCV24789235	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss147535314	ENSMUSSNP2515820	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321348745	CHEV_4_134120139	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28291851					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761175	NES09154002	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134291535 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	within coordinates
Tssr43917	transcription start site region 43917	895 bp upstream
Tssr43918	transcription start site region 43918	872 bp upstream
Tssr43919	transcription start site region 43919	834 bp upstream
Tssr43920	transcription start site region 43920	786 bp upstream
Tssr43921	transcription start site region 43921	770 bp upstream
Tssr43922	transcription start site region 43922	735 bp upstream