rs28291853 SNP Detail

Summary

• ID
  rs28291853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134291309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGTTATC TTCAGAGAAC
  AGAAGATAGA GGTATCTGTG CGGCAGGGCA GGGATGGAGA GAACCGTTAG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGAGCACT GCCGGTGCTA GTCCTGGGGA
  AGCACAGGGA TGCTGAGCTG TAGGGTCAGA AGACCTGTTT AATTCTGGCC ACCATCCACT
  R
  CTTCACTCAC CCGACCATTC TGCTGTGAGC CCTGCAGGTA GAGCCTAGAC TTGCTCTTGG
  TCTGGTGGCC CAGGGACTGC ACCTGCTCAA AGTGTTACTA TGTTCCCAAG CTGCTGTTAA
  ATTCCTGCAG GGCAGTGACA CAGCTGGGCT CTGGGAACTC TAGCCTCTGG CCGGGACTCA
  CTAGAAGGGA CCACCAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37761177	NES09154000	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291853					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761177	NES09154000	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134291309 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	within coordinates
Tssr43917	transcription start site region 43917	669 bp upstream
Tssr43918	transcription start site region 43918	646 bp upstream
Tssr43919	transcription start site region 43919	608 bp upstream
Tssr43920	transcription start site region 43920	560 bp upstream
Tssr43921	transcription start site region 43921	544 bp upstream
Tssr43922	transcription start site region 43922	509 bp upstream