rs28291858 SNP Detail

Summary

• ID
  rs28291858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134289833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACGGCAG TGTAGGGGCC
  TGGACTCCTC GCCATGTAGA TGGCTTCTGG GTTCACAGGG AGATGGCACA GAGAGAGTGA
  CAGGGAAATC TGGGTTAGAA GATATCACAC TATGTCCTTG TCTATACACA GCGCCTACTT
  GTCTTTGGGT CTTATTATCT TTATGACAAT AACCCCTGTC CTTATGTCCC TAACCCCCAC
  Y
  CAGGTCCTAG CTACTGTTGG CTGAGCCTCC TGCATCCTTG TTAGTATTGG CAATGGTTTA
  TAGTCATTCC ACTAATGTAG AGGCATCGTA TATGATCTGA GCGCCCTGAC TGCGAGGTGG
  AGGCCATCTA GCCCTGGTGG GGGCAGGGGC TCACTAAGCA TTGCTGATTG ACAACATGAA
  CAAAGGACCA GGGTGACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37761185	NES09153991	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	T	C	C
ss45583599	mCV24789246	ABI	CRAMUS_MOUSE	f	SNP	T	C				C
ss147535308	ENSMUSSNP7151187	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291858					SNP	T	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761185	NES09153991	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134289833 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	within coordinates
Tssr43917	transcription start site region 43917	802 bp downstream
Tssr43918	transcription start site region 43918	817 bp downstream
Tssr43919	transcription start site region 43919	845 bp downstream
Tssr43920	transcription start site region 43920	913 bp downstream
Tssr43921	transcription start site region 43921	921 bp downstream
Tssr43922	transcription start site region 43922	955 bp downstream