rs28291859 SNP Detail

Summary

• ID
  rs28291859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134289343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTCTAG AAGAAAATAT
  AACAGTATTC ATTCCGGAGA GTTGGGTGGT GACCATATTT CCTTTCTGAT TATCTTGGTT
  TCTTAATTGT CCTACAGTGT TTGTGCAGCA AGTGACCCTT TCCCTTTGAC ATGTGTGCTA
  CGGATAGCAG GACTGTGAAT GCACAGCTCT GCTCAGGAAG AGCTGGGATG TCTGAGCCTC
  Y
  AGAACAAGGA GGCAGTGGAT CCTGGACCAA AGGGCATCAG GAGCATCTTG CTGGTTCTCA
  TAGCAACCCC AGCAGGTGCA ATTTCTGCTG ATGGAAAACA GCCCAGAGAG GTGAGGTGAC
  TGGTCTGGGC TCACACAGTG GGTGGGTGGG TGTCACCAGG CCTGGAGCCC CAATACCTTG
  ATGGCCAGTT GACAAGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37761186	NES09154030	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28291859					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761186	NES09154030	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134289343 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	within coordinates
Tssr43917	transcription start site region 43917	1292 bp downstream
Tssr43918	transcription start site region 43918	1307 bp downstream
Tssr43919	transcription start site region 43919	1335 bp downstream
Tssr43920	transcription start site region 43920	1403 bp downstream
Tssr43921	transcription start site region 43921	1411 bp downstream
Tssr43922	transcription start site region 43922	1445 bp downstream