rs28297471 SNP Detail

Summary

• ID
  rs28297471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174187887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGAGAT CAAGAGTTTG
  GGGGTGATGA GCTACAATGG TGTCAGACTA GGTCTTCTAA GCTAATTAGC ATAATTAATA
  ATTTTTTTTT TTGTAGCGAC TCCCGAGCCG GGAGAGGACC CACGCGTGAC CCGGGCCAAG
  TACTTCATTC GGGATGAGTT TCTGGTGAGT AGGACTTGTA GTCCCTTACT CCTCCTCACG
  R
  GTATTCTCCA GTCAGTGCTG GATTTGGAGA CTGAGCGGTC CAGGCCTTCC ATTGTATTGT
  ACTATGAGTT GATGGCTGGT CCTCTGGTGG TGGGGTGAGG GGCTCCTGGA GAGGGTTGCT
  TGACCGAGCC CCTCTCTCTG CCTACAGAGA ATCAGCACTG CTAGTGGAGA TGGGCGCCAC
  TACTGCTACC CTCACTTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830136	NES08712952	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28297471					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830136	NES08712952	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174187887 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gnas	GNAS complex locus			Intron
				Noncoding-Transcript-Variant
Rr397554	regulatory region 397554			1671 bp downstream
Rr572112	regulatory region 572112			1767 bp distal
Rr572113	regulatory region 572113			1050 bp proximal
Tssr792	transcription start site region 792			240 bp upstream
Tssr22136	transcription start site region 22136			1691 bp downstream
Tssr22137	transcription start site region 22137			643 bp downstream
Tssr22138	transcription start site region 22138			578 bp downstream
Tssr22139	transcription start site region 22139			61 bp downstream
Tssr22140	transcription start site region 22140			160 bp upstream
Tssr22141	transcription start site region 22141			223 bp upstream
Tssr22142	transcription start site region 22142			263 bp upstream
Tssr22143	transcription start site region 22143			358 bp upstream
Tssr22144	transcription start site region 22144			473 bp upstream
Tssr22145	transcription start site region 22145			502 bp upstream
Tssr22146	transcription start site region 22146			508 bp upstream
Tssr28013	transcription start site region 28013			965 bp upstream
Tssr28014	transcription start site region 28014			554 bp upstream