rs28297472 SNP Detail

Summary

• ID
  rs28297472
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174187384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGGCGG CCAGCGCGAT
  GAGCGCCGCA AGTGGATCCA GTGCTTCAAT GATGTGACTG CCATCATCTT CGTGGTGGCC
  AGCAGCAGCT ACAACATGGT CATTCGGGAG GACAACCAGA CTAACCGCCT GCAGGAGGCT
  CTGAACCTCT TCAAGAGCAT CTGGAACAAC AGGTGCGTGG GGTCTCCCTG ACTTGGCTCA
  R
  CCTGTAGGTC TGCAGCTTGC TCTGGCCCCA GCTCTCACCT GGCCCCTCTC TCCTCAGATG
  GCTGCGCACC ATCTCTGTGA TTCTCTTCCT CAACAAGCAA GACCTGCTTG CTGAGAAAGT
  CCTCGCTGGC AAATCGAAGA TTGAGGACTA CTTTCCAGAG TTCGCTCGCT ACACCACTCC
  TGAGGATGGT ACGGTCATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830137	NES08712951	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28297472					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830137	NES08712951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174187384 () rs orientation: forward

Symbol	Name	Function Class
Gnas	GNAS complex locus	within coordinates
Rr397554	regulatory region 397554	1168 bp downstream
Rr572112	regulatory region 572112	1264 bp distal
Rr572113	regulatory region 572113	1553 bp proximal
Tssr792	transcription start site region 792	743 bp upstream
Tssr22136	transcription start site region 22136	1188 bp downstream
Tssr22137	transcription start site region 22137	140 bp downstream
Tssr22138	transcription start site region 22138	75 bp downstream
Tssr22139	transcription start site region 22139	409 bp upstream
Tssr22140	transcription start site region 22140	663 bp upstream
Tssr22141	transcription start site region 22141	726 bp upstream
Tssr22142	transcription start site region 22142	766 bp upstream
Tssr22143	transcription start site region 22143	861 bp upstream
Tssr22144	transcription start site region 22144	976 bp upstream
Tssr22145	transcription start site region 22145	1005 bp upstream
Tssr22146	transcription start site region 22146	1011 bp upstream
Tssr28013	transcription start site region 28013	462 bp upstream
Tssr28014	transcription start site region 28014	51 bp upstream