rs28297474 SNP Detail

Summary

• ID
  rs28297474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174186961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT CCTCAAGCCT GGGGTTCCAC
  R
  TTGCTGGTTC TTCTCCGGGC AATTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37830139	NES08712949	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	G	A	A		G	A	G		G
ss320627432	CHEV_2_174170669	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28297474					SNP	G	G	A	A	G	G	A	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830139	NES08712949	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174186961 () rs orientation: forward

Symbol	Name	Function Class
Gnas	GNAS complex locus	within coordinates
Rr397554	regulatory region 397554	745 bp downstream
Rr572112	regulatory region 572112	841 bp distal
Rr572113	regulatory region 572113	1976 bp proximal
Tssr792	transcription start site region 792	1166 bp upstream
Tssr22135	transcription start site region 22135	1903 bp downstream
Tssr22136	transcription start site region 22136	765 bp downstream
Tssr22137	transcription start site region 22137	224 bp upstream
Tssr22138	transcription start site region 22138	320 bp upstream
Tssr22139	transcription start site region 22139	832 bp upstream
Tssr22140	transcription start site region 22140	1086 bp upstream
Tssr22141	transcription start site region 22141	1149 bp upstream
Tssr22142	transcription start site region 22142	1189 bp upstream
Tssr22143	transcription start site region 22143	1284 bp upstream
Tssr22144	transcription start site region 22144	1399 bp upstream
Tssr22145	transcription start site region 22145	1428 bp upstream
Tssr22146	transcription start site region 22146	1434 bp upstream
Tssr28013	transcription start site region 28013	39 bp upstream
Tssr28014	transcription start site region 28014	308 bp downstream