rs28297476 SNP Detail

Summary

• ID
  rs28297476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174186452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAC ACAAAACAAA
  AAAACTCAGG GGCTTTCTTT AAATAGACTA TGCTCCTTTC TGGTTGGTCT ACTTTAAAAG
  AGTTCCCAGC CCTCTGGCCC TTGGCCCCCA AATCCTCCAA ACTAGTATTA ATATTACTTT
  TTCATATTAC ATTATCTCAG TCCTGCAAAA GGCAAAAGTT AATTTTCCTG TGTTTATAGT
  Y
  GAGCAACTTT TCTTTCTTCT TGTTTTGTTT TGTTTTTGTT TTTTTTAAAC TAAAAGTTTG
  CTATCTCAAA CTTTTTCTGT TTCACAGACC CAGTAGATAG GAAGGGAACT TCGTCTTTGC
  TTCCTGTTCA AAGTGGTGAA TGCAAGAACA GCCCCTTTGT GCCCACAGCT TGTCTTGGCT
  CAGTTCTCAA TAATGAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830141	NES08712945	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28297476					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830141	NES08712945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174186452 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gnas	GNAS complex locus			Intron
				Noncoding-Transcript-Variant
Rr397554	regulatory region 397554			236 bp downstream
Rr572112	regulatory region 572112			332 bp distal
Tssr792	transcription start site region 792			1675 bp upstream
Tssr22135	transcription start site region 22135			1394 bp downstream
Tssr22136	transcription start site region 22136			256 bp downstream
Tssr22137	transcription start site region 22137			733 bp upstream
Tssr22138	transcription start site region 22138			829 bp upstream
Tssr22139	transcription start site region 22139			1341 bp upstream
Tssr22140	transcription start site region 22140			1595 bp upstream
Tssr22141	transcription start site region 22141			1658 bp upstream
Tssr22142	transcription start site region 22142			1698 bp upstream
Tssr22143	transcription start site region 22143			1793 bp upstream
Tssr22144	transcription start site region 22144			1908 bp upstream
Tssr22145	transcription start site region 22145			1937 bp upstream
Tssr22146	transcription start site region 22146			1943 bp upstream
Tssr28013	transcription start site region 28013			454 bp downstream
Tssr28014	transcription start site region 28014			817 bp downstream