rs28297635 SNP Detail

Summary

• ID
  rs28297635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174138773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCCTGA CTACAACACA
  CTATACCACT GTTGAGAGCT CCGAGGTGTA ATGGGGATGG GGGACATTGA AGGGATTTGC
  TGGAGCCATC CCCAACAAAC AGCAAACATA AACATTAAAA AAAGAAAAAA AAAGGAAAAA
  AAAGAAATAA AGAAAAGTAC CCTAGAGCAT TTACGAAACA AATTGCGTGT TTACATTCGG
  Y
  ACTTCCTCAC CCTGTCTCTA CCCTTCCGGT GGGCTCACGA CCACCTGTCG CATTTGTGTG
  TGTGTGTGCC TCTACCCCTT TCCTTGTATC CTAAAGCCTC CATTTCCTGA CTTGGAGATG
  AGTATGGGTA ATTGCCTGAG TGTGGGGTCC TTAGATAAGG AATTTACCGC ATACTGGGGT
  AATCTGGGGT GATAAAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37830303	NES08714559	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	C		C		C	C		C	C		T
ss45379187	mCV24952571	ABI	CRAMUS_MOUSE	f	SNP	T	T					C		C
ss148341340	ENSMUSSNP2125495	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss320627372	CHEV_2_174122481	CHEVERUD	SCREENING_POP	f	SNP												T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs28297635					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830303	NES08714559	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174138773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12856	CpG island 12856	435 bp distal
Cpgi12857	CpG island 12857	within coordinates
Cpgi12858	CpG island 12858	1254 bp proximal
Gm56458	predicted gene, 56458	1788 bp downstream
Gm56459	predicted gene, 56459	1519 bp downstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	1544 bp upstream
Rr374311	regulatory region 374311	690 bp downstream
Rr572094	regulatory region 572094	1585 bp distal
Rr572095	regulatory region 572095	1063 bp distal
Rr572096	regulatory region 572096	1510 bp distal
Rr572097	regulatory region 572097	15 bp proximal
Rr572098	regulatory region 572098	492 bp proximal
Tssr22103	transcription start site region 22103	1349 bp downstream
Tssr22104	transcription start site region 22104	347 bp upstream
Tssr22105	transcription start site region 22105	1749 bp upstream
Tssr22106	transcription start site region 22106	1941 bp upstream
Tssr28009	transcription start site region 28009	1538 bp upstream