rs28297636 SNP Detail

Summary

• ID
  rs28297636
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174137517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATTGGCG TGACCCCAGC
  CCAATAGCTG ACCTGTCGCT GGGGTCGGAG GGGAGTGGGC TAGTGGTTGA GACCCAGTTG
  GCCTATTCGG TGTATGTTCA AACCGTTTCG CCATTTTGAG TGTGTGTGTG TGTATATGTG
  GGGGAGGGTA GTTGGCCAAA CTTTGGACCA AAGTTCAAAG TGTCCGGCAT GCAGTGTGTT
  S
  AGCCGTAGAG TTGAGGTGAC ACGCCTTCGG CAGGTCGCAG GCATTCTCTG GGGGTTCACT
  TTGTCTGCTT TCTTCTACTC AGGGTGACCA CGTGGACGCT GTAGGCAAGG GGCTGTAGTG
  TGCCGAGCCT GTAGTGAGAA GAGGGACATG TTAGACTTCA GAGAATTAAA TCTGCCGCGG
  CACACAGCAT GCATCTTGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830304	NES08714558	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28297636					SNP	C	C	C	C	C	G	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830304	NES08714558	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174137517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12856	CpG island 12856	within coordinates
Cpgi12857	CpG island 12857	1215 bp proximal
Gm56458	predicted gene, 56458	532 bp downstream
Gm56459	predicted gene, 56459	263 bp downstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	288 bp upstream
Rr374311	regulatory region 374311	within coordinates
Rr572094	regulatory region 572094	329 bp distal
Rr572095	regulatory region 572095	within coordinates
Rr572096	regulatory region 572096	254 bp distal
Rr572097	regulatory region 572097	1271 bp proximal
Rr572098	regulatory region 572098	1748 bp proximal
Tssr22102	transcription start site region 22102	954 bp downstream
Tssr22103	transcription start site region 22103	93 bp downstream
Tssr22104	transcription start site region 22104	1603 bp upstream
Tssr28008	transcription start site region 28008	1563 bp upstream
Tssr28009	transcription start site region 28009	282 bp upstream