rs28297638 SNP Detail

Summary

• ID
  rs28297638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174136281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCAGGA AGCCTCTGGA
  ACCCTTAAGT CTCTTTTATC CACTGTGTCT GGGTCTCTCT TCTCTCAGGG CTTCCGCGGC
  TGCAGCTTCT TTGTGCACAG CCCTTCCTTT GTTCCCTTTA TCGGAACCAC CCTCCATGTT
  GGTTCTGTCC TTTCTAAAAG CTTGATTCAA ATCCTGATCT GAGAAGGAGG GAGAAACACA
  Y
  ACCTTTCACC ATCTACCCCA TTTCCTCCTC TCCACTTCCT GCCCAAAGAG CCCGGATGCT
  GCATGGACGC CTCAGAAAGC ACATCCATTT TCTCCCTTCT TTCCCACTGC TCCTACAGGA
  GCAAAGGTGT CCGTCCGATC ATTTATGTAA CCAGACCCCA CACTTCCTTA CATTGGACCC
  TTTGTTCCAG ATAGGTGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37830306	NES08714556	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	C	C	C		C	C		C
ss320627370	CHEV_2_174119989	CHEVERUD	SCREENING_POP	f	SNP									T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs28297638					SNP	T	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830306	NES08714556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174136281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12856	CpG island 12856	709 bp proximal
Gm56458	predicted gene, 56458	583 bp upstream
Gm56459	predicted gene, 56459	849 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr374311	regulatory region 374311	within coordinates
Rr572094	regulatory region 572094	within coordinates
Rr572095	regulatory region 572095	908 bp proximal
Rr572096	regulatory region 572096	961 bp proximal
Tssr22102	transcription start site region 22102	264 bp upstream
Tssr22103	transcription start site region 22103	1124 bp upstream
Tssr28008	transcription start site region 28008	327 bp upstream
Tssr28009	transcription start site region 28009	913 bp downstream