rs28297639 SNP Detail

Summary

• ID
  rs28297639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174136123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCTTTC AATTCTGCCA
  TGTCTAAAAT TAAAAAAAAA AAAAAAAAAG CCTCTACCTC AGCACCAGCC CCTCCCCGAC
  TCTATGTAAT TCCCAGTGTC CAAAACCCAG GTGGTAGTCT TTGATTCCTC CGTCTTTTGT
  GACTTGTCTA ATACGAGTGC TTCCAGGAAG CCTCTGGAAC CCTTAAGTCT CTTTTATCCA
  Y
  TGTGTCTGGG TCTCTCTTCT CTCAGGGCTT CCGCGGCTGC AGCTTCTTTG TGCACAGCCC
  TTCCTTTGTT CCCTTTATCG GAACCACCCT CCATGTTGGT TCTGTCCTTT CTAAAAGCTT
  GATTCAAATC CTGATCTGAG AAGGAGGGAG AAACACACAC CTTTCACCAT CTACCCCATT
  TCCTCCTCTC CACTTCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830307	NES08714554	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28297639					SNP	C	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830307	NES08714554	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174136123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12856	CpG island 12856	867 bp proximal
Gm56458	predicted gene, 56458	741 bp upstream
Gm56459	predicted gene, 56459	1007 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr374311	regulatory region 374311	within coordinates
Tssr22102	transcription start site region 22102	422 bp upstream
Tssr22103	transcription start site region 22103	1282 bp upstream
Tssr28008	transcription start site region 28008	169 bp upstream
Tssr28009	transcription start site region 28009	1071 bp downstream