rs28297640 SNP Detail

Summary

• ID
  rs28297640
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174135585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTAGGT TTAGACTAGA
  GAAGCCATAT AATATCCTGC CTCACACAGG ACAGTCACCA TAACAAAACA TTACCTATTA
  CCTGCCCCAA GTCCCCAGTG CGAGGCTAAG AAGCCATGAT GCACACACAA GGGCTGCTCC
  CACTTCAGCC TCTGGAGCCT GCCCTGCTCT CTCTCTCTCC TTCTGGCCTC TCCTTGGCTG
  K
  ATCCCTCCAC TGGAGAAATT TTATCTGGTT CATTTATCTC AAACCTTAGT AAGGCTGATG
  GACAATTTGA ATTTTTGCCT TGTACCCTTC TCCTAAACTT CAGACCTTTC CTTCCCAGGA
  ATTTATTGTA AGTGTATGTG TATATGTGTG TGTGTGTGTA TATATATATA TATATATATA
  TATATGTATA TATATATATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830308	NES08714585	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28297640					SNP	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830308	NES08714585	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174135585 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12856	CpG island 12856	1405 bp proximal
Gm56458	predicted gene, 56458	1279 bp upstream
Gm56459	predicted gene, 56459	1545 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr374311	regulatory region 374311	508 bp upstream
Tssr22102	transcription start site region 22102	960 bp upstream
Tssr22103	transcription start site region 22103	1820 bp upstream
Tssr28008	transcription start site region 28008	366 bp downstream
Tssr28009	transcription start site region 28009	1609 bp downstream