rs28297662 SNP Detail

Summary

• ID
  rs28297662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174127826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCTACA GAAGTTAGTC
  TTCAGCAACG GAGTTGGCTT TAGGTAGAGC CCACTGGGCT CGATATGGAG GTGCACGCAC
  CAACTTTGGC GATCTGAGAC TGCTGCGCCA TAGCTACAGT ATTGCAATGC GCAGAAAGTA
  ACTGCGTTTG GGATTGGGTG ACAACTCTGG AGCCTAAATC GCACGTGGCA TTCAGCCGGC
  R
  CGGAGCCTGG AAATCGGGTA CCGGCATGGC CAATTTGGGG CCGCGGGACC CTGGAGCCAG
  TGCCTCCCCC CACGCCGTGC AAGTAGTCTT GGTTAATACC GCTCACCTCT GGAGGTTCGA
  GGAGGCCTGA GATCGTGAAA AGGGGCGCGC GCACCTCTCC CGTGCGTCCT AAAGCCAACC
  TTCCCGCGCA GAAAGGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37830330	NES08714874	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	G	G	G	G	G		G		G	G	G		A
ss148341304	ENSMUSSNP7130064	ENSEMBL	ENSEMBL_Sanger	f	SNP		A											G
ss320627359	CHEV_2_174111534	CHEVERUD	SCREENING_POP	f	SNP											A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28297662					SNP	A	A	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830330	NES08714874	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174127826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	within coordinates
Gm56457	predicted gene, 56457	575 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	1826 bp distal
Rr56204	regulatory region 56204	within coordinates
Rr56205	regulatory region 56205	1374 bp proximal
Rr374310	regulatory region 374310	923 bp upstream
Tssr789	transcription start site region 789	1796 bp downstream
Tssr790	transcription start site region 790	1740 bp downstream
Tssr22087	transcription start site region 22087	1707 bp downstream
Tssr22088	transcription start site region 22088	1408 bp downstream
Tssr22089	transcription start site region 22089	749 bp downstream
Tssr22090	transcription start site region 22090	714 bp downstream
Tssr22091	transcription start site region 22091	669 bp downstream
Tssr28006	transcription start site region 28006	849 bp upstream
Tssr28007	transcription start site region 28007	125 bp downstream