rs28297663 SNP Detail

Summary

• ID
  rs28297663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174127528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGCGCTTG GGAGGCCAAA GGTTTGTTGG ACGGTGAGGC
  ATTTCTGGCG CCTCGCTGGA GACAACCTGA GGTCCCCGAG CTGATACCCG GTGCGCAACA
  Y
  TGAATTCGGT GTGCCACACT GAATTCCCAG CGCGCCCCAG GTTTGGAGTT ACATACATAA
  ACGGCAAAGG TAAGTCACTT GTTTTCTATG TTCTCTCCCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830331	NES08714871	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28297663					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830331	NES08714871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174127528 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	within coordinates
Gm56457	predicted gene, 56457	873 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	1528 bp distal
Rr56204	regulatory region 56204	within coordinates
Rr56205	regulatory region 56205	1672 bp proximal
Rr374310	regulatory region 374310	1221 bp upstream
Tssr789	transcription start site region 789	1498 bp downstream
Tssr790	transcription start site region 790	1442 bp downstream
Tssr22087	transcription start site region 22087	1409 bp downstream
Tssr22088	transcription start site region 22088	1110 bp downstream
Tssr22089	transcription start site region 22089	451 bp downstream
Tssr22090	transcription start site region 22090	416 bp downstream
Tssr22091	transcription start site region 22091	371 bp downstream
Tssr28006	transcription start site region 28006	551 bp upstream
Tssr28007	transcription start site region 28007	423 bp downstream