rs28297664 SNP Detail

Summary

• ID
  rs28297664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174127123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGGGGTG CCACCTTCAA
  CCAGTCACTC ACTCAGCGTC TGCACGCTCT GAAGTTGCAG AGCGCCGACG CCTCCCCGAG
  ACGTGCGCAG CCCACCACTC AGGAGCCTGA GAGCGCAAGC GAGGGGGAGG AGCCCCAGCG
  AGGGCCCTTA GATCAGGATC CTCGGGACCC CGAGGAGGAG CCAGAGGAGC GCAAGGAGGA
  R
  AACAGGCAGC CCCGCCGCTG CAAGACCAGG AGGCCAGCCC GCCGTCGCGA CCAGTCCCCG
  GAGTCCCCTC CCAGAAAGGG GCCCATCCCC ATCCGGCGTC ACTAATGGGT GACTCCGTCC
  AGATTCTCCT TGTTTTCATG GATAAAGGTT AGTTGCCCTG ACCAAACTGG GGTCCCTGAG
  ACAGTAGGGT GGGAGGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830332	NES08714869	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28297664					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830332	NES08714869	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174127123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	within coordinates
Gm56457	predicted gene, 56457	1278 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	1123 bp distal
Rr56204	regulatory region 56204	within coordinates
Rr374310	regulatory region 374310	1626 bp upstream
Tssr789	transcription start site region 789	1093 bp downstream
Tssr790	transcription start site region 790	1037 bp downstream
Tssr22087	transcription start site region 22087	1004 bp downstream
Tssr22088	transcription start site region 22088	705 bp downstream
Tssr22089	transcription start site region 22089	46 bp downstream
Tssr22090	transcription start site region 22090	11 bp downstream
Tssr22091	transcription start site region 22091	22 bp upstream
Tssr28006	transcription start site region 28006	146 bp upstream
Tssr28007	transcription start site region 28007	828 bp downstream