rs28297665 SNP Detail

Summary

• ID
  rs28297665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174127113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCC CGAGGAGGAG CCAGAGGAGC
  R
  CAAGGAGGAA AACAGGCAGC CCCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37830333	NES08714868	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	G	A		G	A	A	G		G
ss320627357	CHEV_2_174110821	CHEVERUD	SCREENING_POP	f	SNP								G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28297665					SNP	G	G	A	A	G	G	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830333	NES08714868	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174127113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	within coordinates
Gm56457	predicted gene, 56457	1288 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	1113 bp distal
Rr56204	regulatory region 56204	within coordinates
Rr374310	regulatory region 374310	1636 bp upstream
Tssr789	transcription start site region 789	1083 bp downstream
Tssr790	transcription start site region 790	1027 bp downstream
Tssr22087	transcription start site region 22087	994 bp downstream
Tssr22088	transcription start site region 22088	695 bp downstream
Tssr22089	transcription start site region 22089	36 bp downstream
Tssr22090	transcription start site region 22090	1 bp downstream
Tssr22091	transcription start site region 22091	32 bp upstream
Tssr28006	transcription start site region 28006	136 bp upstream
Tssr28007	transcription start site region 28007	838 bp downstream