rs28297666 SNP Detail

Summary

• ID
  rs28297666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174126616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTGCAG AGCCAGAGGG
  TGAGTCGGCT TCTCGGTGAG CACCTAAGAG AATGGATCGC AGGTCCCGGG CTCAGCAGTG
  GCGCCGAGCT CGCCATAATT ACAACGACCT GTGCCCGCCC ATAGGCCGCC GGGCTGCCAC
  CGCTCTCCTC TGGCTCTCCT GCTCCATTGC TCTCCTCCGC GCCCTAGCCT CTTCCAACGC
  Y
  CGCGCCCAGC AGCGTGCTGC CCAGCGCCGG AGCTTCCTTA ACGCCCACCA CCGCTCCGCT
  GCCGCTGCAG CTGCCGCACA GGTACTCCCT GAGTCCTCTG AATCTGAGTC TGATCACGAG
  CACGAGGAGG TTGAGCCTGA GCTGGCCCGC CCCGAGTGCC TAGAGTACGA TCAGGACGAC
  TACGAGACCG AGACCGATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830334	NES08714916	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28297666					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830334	NES08714916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174126616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	within coordinates
Gm56457	predicted gene, 56457	1785 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	616 bp distal
Rr56204	regulatory region 56204	within coordinates
Tssr789	transcription start site region 789	586 bp downstream
Tssr790	transcription start site region 790	530 bp downstream
Tssr22087	transcription start site region 22087	497 bp downstream
Tssr22088	transcription start site region 22088	198 bp downstream
Tssr22089	transcription start site region 22089	450 bp upstream
Tssr22090	transcription start site region 22090	474 bp upstream
Tssr22091	transcription start site region 22091	529 bp upstream
Tssr28006	transcription start site region 28006	341 bp downstream
Tssr28007	transcription start site region 28007	1335 bp downstream