rs28297667 SNP Detail

Summary

• ID
  rs28297667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174125790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGGCTG CTCTAATTAA
  TTACAGTTAC TTTAACAGCC CTGACAAAAG TAACCACCTT TGATAAGGTT AGTGTTTACT
  TGAGGCTCTG ATCCTCAAGC ATTCACGCTC TTCGGTCATT AACACTCATT CACGTACGGA
  TCCTCATTCC CCTGAATATT TACAATTTTG CGTTCTGGTT TTCAATTGTT TGGTGGCTAT
  R
  CTCATGGAGA AAAAGTTGAG GAGTGGGGAC AACCCCCCGT GGGAATCTAT ACTTGGCTTC
  TAAAATCCGC TAACCTGTAG CTATCTTACT CCCTTCGCTC GCTAGACCTC GATATCCAGC
  CCCCCACCCC CCATGCTTTG GCCAAATCTA CTCAAACAAG GTTCCCGCCT GCCACCTGCC
  GGCCCACTAG GGTCTGCGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830335	NES08714914	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28297667					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830335	NES08714914	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174125790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12855	CpG island 12855	96 bp proximal
Gnas	GNAS complex locus	323 bp upstream
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr41274	regulatory region 41274	11 bp proximal
Rr56204	regulatory region 56204	within coordinates
Tssr789	transcription start site region 789	231 bp upstream
Tssr790	transcription start site region 790	271 bp upstream
Tssr22087	transcription start site region 22087	315 bp upstream
Tssr22088	transcription start site region 22088	613 bp upstream
Tssr22089	transcription start site region 22089	1276 bp upstream
Tssr22090	transcription start site region 22090	1300 bp upstream
Tssr22091	transcription start site region 22091	1355 bp upstream
Tssr28006	transcription start site region 28006	1167 bp downstream