rs28301269 SNP Detail

Summary

• ID
  rs28301269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163309847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGTCATT AGCCAGCTCT
  GCTAGGGAGG AGGCATCAAA GCAGCTTCAA GGACCATCAT CCAAAAGGCC AGGGGCTCAG
  CTGTGCCAGG CTTAAGGAGA TCACCCGGGG GAGGACAGGG CCCTTCTCAT CAGACTGGAA
  GCCTGCCGCA TGGGACGTGG GTGACAAGAC TTCTTACCCT AACAGTCACG GTGAACACCA
  Y
  GGCTGGAAGC CGGGAAGTGC TTCAAGAAAA GACTCTCATG GCTATTGAAC ACCCCCTCCT
  AGGGTTGTTC TGTCTGTGAG CTGAAGAAAA GAGGCAGGGC CAAAGTCATG GCGCTATGTA
  ATATGGCTGA TTTGGCATGG TGGTTGTATG TAATACAGGC GGCTTTGCGT GCTGGCTGGC
  TTCCTGCATC AGAGGGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37521332	NES08883730	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28301269					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521332	NES08883730	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163309847 () rs orientation: forward

Symbol	Name	Function Class
Fitm2	fat storage-inducing transmembrane protein 2	mRNA-UTR
Rr569385	regulatory region 569385	755 bp distal