rs28301274 SNP Detail

Summary

• ID
  rs28301274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163308507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATCTCCA GTGCCCTTTA
  ATTCGCTTGT TTACACATGG ACTGTGTGTA GGTAACAGTG GCACGAACTA TTCTCTGACT
  GCAATCTGGT ACCCAGACAG TGACGGATGC ACGTGGAAGC TCAGATGCTC CCAAAGCCTG
  GGGTTTACCA CCAAGGGACA ACAGACGCTT GGAAGGATGA CATGAGACTA CTTCCATAGG
  Y
  GACCCAGGCT CTGAGTTGTT TCTTTACTTT CTCTAAAGGA GCCAGAATGC TCTAAATACT
  GTCAGGAGAA AGTTGGAGAG ATGATGACCT GTGGAGCACA CATGCTCAGC ATCTTATGTA
  TGATTTCCTT TCAGTGCTCA AAGAATCGCC TCCATTTTAC TGACAAGGCC AACAAGGGCT
  TGCACGCTGG TCAGGTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37521337	NES08883768	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss320603315	CHEV_2_163292323	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28301274					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521337	NES08883768	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163308507 () rs orientation: forward

Symbol	Name	Function Class
Rr374196	regulatory region 374196	1354 bp downstream
Rr569384	regulatory region 569384	1641 bp distal
Rr569385	regulatory region 569385	119 bp proximal