rs28301275 SNP Detail

Summary

• ID
  rs28301275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163308388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  AGAGACACAC ACACACACAC AATTTAATTT AAAAGTTGAA GTTAAAAAGT TAAATCAACA
  CACAGAAAGG AACACAGCAA ACTCCGGAAT GTAGACTCCA TTATCTCCAG TGCCCTTTAA
  TTCGCTTGTT TACACATGGA CTGTGTGTAG GTAACAGTGG CACGAACTAT TCTCTGACTG
  Y
  AATCTGGTAC CCAGACAGTG ACGGATGCAC GTGGAAGCTC AGATGCTCCC AAAGCCTGGG
  GTTTACCACC AAGGGACAAC AGACGCTTGG AAGGATGACA TGAGACTACT TCCATAGGCG
  ACCCAGGCTC TGAGTTGTTT CTTTACTTTC TCTAAAGGAG CCAGAATGCT CTAAATACTG
  TCAGGAGAAA GTTGGAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37521338	NES08883767	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28301275					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521338	NES08883767	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163308388 () rs orientation: forward

Symbol	Name	Function Class
Rr374196	regulatory region 374196	1235 bp downstream
Rr569384	regulatory region 569384	1522 bp distal
Rr569385	regulatory region 569385	238 bp proximal