rs28301276 SNP Detail

Summary

• ID
  rs28301276
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163308371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTGTGC TCGCAAAACA
  CACACACACA CACACACAGA GACACACACA CACACACAAT TTAATTTAAA AGTTGAAGTT
  AAAAAGTTAA ATCAACACAC AGAAAGGAAC ACAGCAAACT CCGGAATGTA GACTCCATTA
  TCTCCAGTGC CCTTTAATTC GCTTGTTTAC ACATGGACTG TGTGTAGGTA ACAGTGGCAC
  S
  AACTATTCTC TGACTGCAAT CTGGTACCCA GACAGTGACG GATGCACGTG GAAGCTCAGA
  TGCTCCCAAA GCCTGGGGTT TACCACCAAG GGACAACAGA CGCTTGGAAG GATGACATGA
  GACTACTTCC ATAGGCGACC CAGGCTCTGA GTTGTTTCTT TACTTTCTCT AAAGGAGCCA
  GAATGCTCTA AATACTGTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37521339	NES08883766	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C		G	G	G	G
ss320603314	CHEV_2_163292187	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28301276					SNP	G	G	G	G	G	G	C	G	G	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521339	NES08883766	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163308371 () rs orientation: forward

Symbol	Name	Function Class
Rr374196	regulatory region 374196	1218 bp downstream
Rr569384	regulatory region 569384	1505 bp distal
Rr569385	regulatory region 569385	255 bp proximal