rs28301283 SNP Detail

Summary

• ID
  rs28301283
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163307662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGAGAGG TGGCTGCTGC
  TGCAGGGCCC AACAGCGTGA GAAGATTCTA ATCTCGGATT CAATGGGTTT TCGACACACA
  CTGCCTAGAG GTGCCAAGCA GGTCAGACTG ACAGTGAGTG GGGTCTAAGG GCATAAAATG
  CTATTTTGTG CTCAGAGAGT TCCTGGGCTG CAAAGTGACC TTATCCTGGT AGGCTGTCAC
  W
  GCTCTTCAGC AGTCTGTGAG ACCTACCTCT CTCTCTGCCA AGGAGACAAC TCCCAGGCCT
  GGCTGACCCA GACCTCAGGA TCCAATGACA GAATAAAGCA GGCTGAGCGA TATCTGTACT
  TAGGACGAAG CACTTAGGTG AACCATCTTG AGAAACTTCA GCTCTAAAGT CCCTTCTATG
  AAAGGATGAG ACATCGGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37521347	NES08883832	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	T		A	T		T
ss320603306	CHEV_2_163291478	CHEVERUD	SCREENING_POP	f	SNP									A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs28301283					SNP	A	A	A	A	A	T	A	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521347	NES08883832	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163307662 () rs orientation: forward

Symbol	Name	Function Class
Rr374196	regulatory region 374196	509 bp downstream
Rr569383	regulatory region 569383	1429 bp distal
Rr569384	regulatory region 569384	796 bp distal
Rr569385	regulatory region 569385	964 bp proximal