rs28301285 SNP Detail

Summary

• ID
  rs28301285
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163307027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTAGATCC CAGGGTTTCA
  GGAGTTACCT GGGTAACCTC TACCCATCCA GTCTACCTAT GGCTTGCTTA TCAGATGAGG
  AGACTGAGGC CCAGAGGCGC TGTTGCTGGT TCAAGATCAC AGAAGAACAG AGAAAAGCAG
  GGGTGGACGG TGCCCAGGCT AGGCTTTCTA ACAGCAGCCC AGAGCCATCT GCATCAAAAC
  M
  AGGCATGCCT ACAAGCCCCA CCAATCGCTT CCCAAGTCTT TCCTCAGTCT CCGGGGCTTT
  AGAAAATGAG GGAAGCCAGG TTCTCCCCTC TAAACAGAAG CCATGGTCTA CCTACATGGT
  TTTGGGTGTG CTATCCCTGC CTTGGCTATA CTTTCCTGGA GGAATGTCCC AATTCTTCTC
  CCTCCTTTCA GACCAAAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37521349	NES08883830	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28301285					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37521349	NES08883830	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163307027 () rs orientation: forward

Symbol	Name	Function Class
Rr374196	regulatory region 374196	within coordinates
Rr569383	regulatory region 569383	794 bp distal
Rr569384	regulatory region 569384	161 bp distal
Rr569385	regulatory region 569385	1599 bp proximal