rs28302426 SNP Detail

Summary

• ID
  rs28302426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:80089788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAAAGAG ACCATATTAC
  AAACTTGAGT TGGGAAAGGA ATTTAATATT AAACTAGGAC TCATGGGGGC ATGAGCACAT
  ATATGGTCTG TCCTGAGTCT TTAAACTTCT ATTTCTAAAA GTCTTTTTAC ACCAATCATC
  ATGGAGAAAA AAGGACAATA CCAAATATGG GAATTTAACT TTCTTAATTT CTCTGGCTGT
  Y
  ACTTCAGTGA AAGCCTCAAA ATCTCAAAAC TTGATCCTAT ATCTTGTAAC ATGAGGCCCC
  TTTTGGGTTC CTAGAACTGT ACACAGTTTA GGGATCTTAG AGTACTTACT TAGTTAGTGA
  TTCAATTGCT GTGAAGAGAT ACCATGACCA AGGCAACTTC TATAAAAAAC AGCATTGAAT
  TGGGGCTAGC TTACAGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38182648	NES09237795	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	T	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28302426					SNP	C	C	T	T	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38182648	NES09237795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:80089788 () rs orientation: forward

Symbol	Name	Function Class
Tssr24926	transcription start site region 24926	1647 bp upstream