rs28302433 SNP Detail

Summary

• ID
  rs28302433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:80088676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAATTTT GACTCTGTTG
  AAGATCCTGT GTCTTCTCCA CTTTATTTGG CTTTTTGTGG TAGTATGTGA AGTCTTATCA
  CTTTAGTTAA GTGAGTGATC TTTCTGCACT GACTATGGGT TTCTTTGATG GAGAGTTCTG
  AACCTTTGAT GCTTTTGAAA GGTTTTCACA AATCAAACTC TAGACTAGAT CTTCTGCCTT
  Y
  GGACTTACTT TTGGTGCATC CAGAAGACTT TTAGAAACAA TCTAACAAGA CAAACCAGTT
  AAGCTAATGT ACTGTTTACA CAGAATGTTT TTGCAAACAG AAAAGGAATA AAAGATCTTT
  GTAACTACAG CTCTCTCCCT CCTACGTATT CTTCTGAGAC ATGCAAATGC GAATATGTCA
  GCTTCCTCTA AGACAAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38182655	NES09237905	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T		T	T	T	T	T	C	C	T	C
ss45375934	mCV25098668	ABI	CRAMUS_MOUSE	f	SNP	C	T					T
ss146791270	ENSMUSSNP3086498	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28302433					SNP	C	T	T	T	C	T	T	T	T	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38182655	NES09237905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:80088676 () rs orientation: forward

Symbol	Name	Function Class
Tssr24926	transcription start site region 24926	535 bp upstream