rs28302434 SNP Detail

Summary

• ID
  rs28302434
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:80088576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATGCAC ACTATTACAA
  ATGTGTAAGT TCACAAACTT AGAATGTGGT TCCCTGTGCT TAAAAGCAAG GCTCTCTTCA
  AAGATTTGTC TGCTTATATT GGGAAATTTT GACTCTGTTG AAGATCCTGT GTCTTCTCCA
  CTTTATTTGG CTTTTTGTGG TAGTATGTGA AGTCTTATCA CTTTAGTTAA GTGAGTGATC
  W
  TTCTGCACTG ACTATGGGTT TCTTTGATGG AGAGTTCTGA ACCTTTGATG CTTTTGAAAG
  GTTTTCACAA ATCAAACTCT AGACTAGATC TTCTGCCTTT GGACTTACTT TTGGTGCATC
  CAGAAGACTT TTAGAAACAA TCTAACAAGA CAAACCAGTT AAGCTAATGT ACTGTTTACA
  CAGAATGTTT TTGCAAACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38182656	NES09237903	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T		T	T	T	T	A	T	A	A	T
ss45320966	mCV25098667	ABI	CRAMUS_MOUSE	f	SNP	A	A	T				T		T
ss146791265	ENSMUSSNP2540014	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28302434					SNP	A	A	T	T	T	T	T	T	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38182656	NES09237903	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:80088576 () rs orientation: forward

Symbol	Name	Function Class
Tssr24926	transcription start site region 24926	435 bp upstream