rs28304729 SNP Detail

Summary

• ID
  rs28304729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85122609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAATGCC TCCACGGTAG
  TTTAGAAATT AGAAAGTACC ACAGATTGGA AGGTCTGGGC AGCAGCAAGG ACCACAAGAC
  TACAGACCCC TTCCTTCCTT TTGCTTTGCT TTGCAGACTG GAAGGGTATG CTCACTGCTC
  ACTGCTCCGA TATTCTGTTG TGCTGTGATT CACAGTAGCA AGGGTGAGTG GTACCCAGCC
  Y
  GTGTCTAGAA TCCCCTTGCA CCTGCTCTTC CGTTCATCTT TACTCAAGCT GCAGAAGTCT
  ACTGGCTTCC TTTACACCAG GCAGTAGAGG GGGGGGGGGC GGGAGGGGAA CTGTATTTCT
  AGGAACCCAA TCCAGGTCCT GTTGATTCTT TCCACATTCT CCGTAATTAC TCTCCTCTTG
  GCGGCTCATC ACTTTGATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38215549	NES09594749	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28304729					SNP	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38215549	NES09594749	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85122609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	708 bp proximal
Rr594659	regulatory region 594659	516 bp proximal
Rr594660	regulatory region 594660	1174 bp proximal
Rr594661	regulatory region 594661	1289 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	1054 bp upstream
Tssr37705	transcription start site region 37705	748 bp upstream
Tssr37706	transcription start site region 37706	764 bp upstream
Tssr37707	transcription start site region 37707	779 bp upstream
Tssr37708	transcription start site region 37708	837 bp upstream
Tssr37709	transcription start site region 37709	1045 bp upstream
Tssr37710	transcription start site region 37710	1131 bp upstream
Tssr37711	transcription start site region 37711	1146 bp upstream
Tssr37712	transcription start site region 37712	1303 bp upstream