rs28304731 SNP Detail

Summary

• ID
  rs28304731
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85122326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAT AGATTTGTGG CAGAGAGAAG
  M
  GAACCCTGTG GCCCTGATAC CAAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss38215551	NES09594743	PERLEGEN	MM_PANEL2	f	SNP	C			C		A		C		A	A		C
ss45694189	mCV22285890	ABI	CRAMUS_MOUSE	f	SNP		C	A		C		A
ss146897471	ENSMUSSNP4971344	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A				A
ss321193464	CHEV_4_84849993	CHEVERUD	SCREENING_POP	f	SNP									A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs28304731					SNP	C	C	A	C	C	A	A	C	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38215551	NES09594743	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85122326 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	991 bp proximal
Rr594659	regulatory region 594659	799 bp proximal
Rr594660	regulatory region 594660	1457 bp proximal
Rr594661	regulatory region 594661	1572 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	1337 bp upstream
Tssr37705	transcription start site region 37705	1031 bp upstream
Tssr37706	transcription start site region 37706	1047 bp upstream
Tssr37707	transcription start site region 37707	1062 bp upstream
Tssr37708	transcription start site region 37708	1120 bp upstream
Tssr37709	transcription start site region 37709	1328 bp upstream
Tssr37710	transcription start site region 37710	1414 bp upstream
Tssr37711	transcription start site region 37711	1429 bp upstream
Tssr37712	transcription start site region 37712	1586 bp upstream