rs28304734 SNP Detail

Summary

• ID
  rs28304734
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85122112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTTCCT GCACCATCCC
  CTCACACCCC TTTCTCTGAT GCCTTCCAAA AGTAGCTGCT CAACACCTCT CTTCTGGGGC
  AACACCCCAA AGGTTTTCAT AGCTAACAGT TGAGGCTTAA ATAGAATCCC TGACTTAGAT
  GAGACCTAGG TGAGAGCAAT AGGTTCAAAG CGCTTTGAAG TTTTCTATGC AGAACCCAAC
  R
  TGGTTCCTCT GATCTTTAGC AGCATACGCT ATGAAGGTAA GTAGTCAAAG AGACAAGGAA
  AGGCGGGGAC TAGCTTTGCT TTAAGATTTT AAGGTTAAGG CAAGTGCTCA AAGTTTCCGA
  GGAGCCTCTT CAGGTCCCCA TTTCACTTCT TTCATGTGTT GAGACCAAAG TTGCAAATTT
  CAGACCACAT CATAGATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ
ss38215554	NES09594733	PERLEGEN	MM_PANEL2	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ
rs28304734					SNP	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38215554	NES09594733	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85122112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	1205 bp proximal
Rr594659	regulatory region 594659	1013 bp proximal
Rr594660	regulatory region 594660	1671 bp proximal
Rr594661	regulatory region 594661	1786 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	1551 bp upstream
Tssr37705	transcription start site region 37705	1245 bp upstream
Tssr37706	transcription start site region 37706	1261 bp upstream
Tssr37707	transcription start site region 37707	1276 bp upstream
Tssr37708	transcription start site region 37708	1334 bp upstream
Tssr37709	transcription start site region 37709	1542 bp upstream
Tssr37710	transcription start site region 37710	1628 bp upstream
Tssr37711	transcription start site region 37711	1643 bp upstream
Tssr37712	transcription start site region 37712	1800 bp upstream