rs28304959 SNP Detail

Summary

• ID
  rs28304959
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110446085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGTGCT TCATGAAGCA
  AGAATTTTCT GTTTGAGGAA ACATTCAGAA GATAGGAATT ATCTTAAGTC TCAGCACTCA
  GGAGGCACAG GTAGGTGGAT CTGTGAGATC AAGGCCACTC TGGTCTACAG AGTGAATTCC
  AGGACAGCCA GGATTATACA GGGAAATGCT GGGGGAAAAA AAAGAGGCGA ATTTAAGATA
  S
  CAGAACACAA AGCTTTCCGA GTTTCCATAT CAACTATATT ACTTCAGTTT CAGCATAAGT
  GAAGCATATA TGAATATGTT TTAATTCGTT TGAGTTGTCT TACATTGTTT TGCAAAATTA
  AATTTAAGGT TCTTGAAACT GTTAATAAAA CTAGGAACTA TGTCTGGGAT TATTTCCTCA
  ATATGTGTAT GGTACACTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37708382	NES09232191	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28304959					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37708382	NES09232191	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110446085 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	within coordinates
Rr377006	regulatory region 377006	805 bp downstream
Tssr38375	transcription start site region 38375	526 bp upstream