rs28306348 SNP Detail

Summary

• ID
  rs28306348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98810207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTACCCA CCCCAACCCT
  GTCAGGAGCC TTCTAGAAAC CATCCAATGA TCTCATTTTA GGTTTCTTAG AAATCCTTTA
  GAAATAGAAA CTTTGAAATC CTATAAATGA CTTTTATTAT TATAATTATT ATTATTTTTA
  AGTTTCGATT GTCCCTTGAG TTTGTGCCCA TTCTTGGACT GGTCTCTCTG GGATCCTTCC
  R
  CTACAGCCAT GTTTTCGTAG TTTATCTTTC CCTGCCCCTA CAGTAAAGTA TCTTTAAACT
  CCAAATCTGC TTCACAAACT GGCAAGTCTG AAAATGAGTT TCTGGAATTA AGCCACGAAT
  CCCAGTTTGG ACCGGGCGAA GGTCCCTAAA AGTTGACAGG AACTCCTCAG GCTGCCAGCT
  GACCCTGGAA AGTTGTGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38241672	NES09551232	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A		A	A	A	G		G
ss321222356	CHEV_4_98588661	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28306348					SNP	A	A	A	A	G	A	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38241672	NES09551232	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98810207 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	772 bp proximal
Rr398351	regulatory region 398351	1241 bp upstream
Rr595805	regulatory region 595805	within coordinates
Rr595806	regulatory region 595806	1350 bp proximal
Rr595807	regulatory region 595807	1640 bp proximal
Rr595808	regulatory region 595808	1920 bp proximal
Tssr37901	transcription start site region 37901	958 bp upstream
Tssr37902	transcription start site region 37902	1689 bp upstream
Tssr37903	transcription start site region 37903	1754 bp upstream
Tssr37904	transcription start site region 37904	1781 bp upstream
Tssr37905	transcription start site region 37905	1845 bp upstream
Tssr37906	transcription start site region 37906	1875 bp upstream
Tssr37907	transcription start site region 37907	1938 bp upstream
Usp1	ubiquitin specific peptidase 1	1840 bp upstream