rs28306349 SNP Detail

Summary

• ID
  rs28306349
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98810186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTGAGG GCTGGATAGT
  TACTTTACCC ACCCCAACCC TGTCAGGAGC CTTCTAGAAA CCATCCAATG ATCTCATTTT
  AGGTTTCTTA GAAATCCTTT AGAAATAGAA ACTTTGAAAT CCTATAAATG ACTTTTATTA
  TTATAATTAT TATTATTTTT AAGTTTCGAT TGTCCCTTGA GTTTGTGCCC ATTCTTGGAC
  W
  GGTCTCTCTG GGATCCTTCC ACTACAGCCA TGTTTTCGTA GTTTATCTTT CCCTGCCCCT
  ACAGTAAAGT ATCTTTAAAC TCCAAATCTG CTTCACAAAC TGGCAAGTCT GAAAATGAGT
  TTCTGGAATT AAGCCACGAA TCCCAGTTTG GACCGGGCGA AGGTCCCTAA AAGTTGACAG
  GAACTCCTCA GGCTGCCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38241673	NES09551231	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		T	T	T		A
ss321222355	CHEV_4_98588640	CHEVERUD	SCREENING_POP	f	SNP									T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28306349					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38241673	NES09551231	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98810186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	793 bp proximal
Rr398351	regulatory region 398351	1262 bp upstream
Rr595805	regulatory region 595805	12 bp proximal
Rr595806	regulatory region 595806	1371 bp proximal
Rr595807	regulatory region 595807	1661 bp proximal
Rr595808	regulatory region 595808	1941 bp proximal
Tssr37901	transcription start site region 37901	979 bp upstream
Tssr37902	transcription start site region 37902	1710 bp upstream
Tssr37903	transcription start site region 37903	1775 bp upstream
Tssr37904	transcription start site region 37904	1802 bp upstream
Tssr37905	transcription start site region 37905	1866 bp upstream
Tssr37906	transcription start site region 37906	1896 bp upstream
Tssr37907	transcription start site region 37907	1959 bp upstream
Usp1	ubiquitin specific peptidase 1	1861 bp upstream