rs28306368 SNP Detail

Summary

• ID
  rs28306368
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAATGA CACATGTTTA
  AATGAAAATT AGCCTACTTT GTTTTGTTTT GAGATGAATC TCACTCTGTA GCCCAAGCAA
  AAGTTGAACT CAAGTTAATA CTCCTGCCTC AGTTTCTGAG TACTGGGATT GCAGGTGTGA
  GCTAACACAC CTGGCTCATA CTTTTCATTT ATGGACTAAA ATCAGATTCC AGCTTCATCT
  R
  TAGGAAAGCT ATTTGGTGAC ATCAAGCGTT CAGTTACCAA AATGAACAGA GTTGTGGTTG
  CATTGAATGG TAACTGACTT AAGTCTAGTC TATCAATAAT GGAACTTATT AGAATAAATT
  GGCTCTCTTC AGTAATCAGG CATGCTCTAT TCACTAACTG CTCAGTCTCA TCCTCTACTG
  TGAGGTAAAC TCGGTGTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667305	NES09035280	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G	A		G	G	A	G
ss147245814	ENSMUSSNP5352181	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306368					SNP	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667305	NES09035280	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879259 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Rr562816	regulatory region 562816	969 bp distal
Tssr600	transcription start site region 600	1209 bp upstream
Tssr601	transcription start site region 601	1198 bp upstream
Tssr602	transcription start site region 602	1699 bp downstream
Tssr19429	transcription start site region 19429	1481 bp downstream
Tssr19430	transcription start site region 19430	1371 bp downstream
Tssr19431	transcription start site region 19431	1287 bp downstream
Tssr19432	transcription start site region 19432	1204 bp downstream
Tssr19433	transcription start site region 19433	614 bp downstream
Tssr19434	transcription start site region 19434	570 bp downstream
Tssr19435	transcription start site region 19435	391 bp upstream
Tssr19436	transcription start site region 19436	772 bp upstream
Tssr19437	transcription start site region 19437	1507 bp upstream
Tssr19438	transcription start site region 19438	1590 bp upstream
Tssr19439	transcription start site region 19439	1655 bp upstream
Tssr25660	transcription start site region 25660	1460 bp upstream
Tssr25661	transcription start site region 25661	1439 bp upstream
Tssr25662	transcription start site region 25662	1336 bp upstream
Tssr25663	transcription start site region 25663	1310 bp upstream
Tssr25664	transcription start site region 25664	1269 bp upstream
Tssr25665	transcription start site region 25665	1161 bp upstream
Tssr25666	transcription start site region 25666	607 bp upstream
Tssr25667	transcription start site region 25667	564 bp upstream
Tssr25668	transcription start site region 25668	537 bp upstream
Tssr25669	transcription start site region 25669	474 bp upstream
Tssr25670	transcription start site region 25670	423 bp downstream
Tssr25671	transcription start site region 25671	466 bp downstream
Tssr25672	transcription start site region 25672	535 bp downstream
Tssr25673	transcription start site region 25673	570 bp downstream
Tssr25674	transcription start site region 25674	774 bp downstream
Tssr25675	transcription start site region 25675	822 bp downstream
Tssr25676	transcription start site region 25676	859 bp downstream
Tssr25677	transcription start site region 25677	886 bp downstream
Tssr25678	transcription start site region 25678	1558 bp downstream
Tssr25679	transcription start site region 25679	1567 bp downstream
Tssr25680	transcription start site region 25680	1580 bp downstream
Tssr25681	transcription start site region 25681	1627 bp downstream
Tssr25682	transcription start site region 25682	1709 bp downstream
Tssr25683	transcription start site region 25683	1716 bp downstream
Tssr25684	transcription start site region 25684	1807 bp downstream