rs28306369 SNP Detail

Summary

• ID
  rs28306369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGGAGAT ATATCACAAA
  AAGAATGACA CATGTTTAAA TGAAAATTAG CCTACTTTGT TTTGTTTTGA GATGAATCTC
  ACTCTGTAGC CCAAGCAAAA GTTGAACTCA AGTTAATACT CCTGCCTCAG TTTCTGAGTA
  CTGGGATTGC AGGTGTGAGC TAACACACCT GGCTCATACT TTTCATTTAT GGACTAAAAT
  Y
  AGATTCCAGC TTCATCTGTA GGAAAGCTAT TTGGTGACAT CAAGCGTTCA GTTACCAAAA
  TGAACAGAGT TGTGGTTGCA TTGAATGGTA ACTGACTTAA GTCTAGTCTA TCAATAATGG
  AACTTATTAG AATAAATTGG CTCTCTTCAG TAATCAGGCA TGCTCTATTC ACTAACTGCT
  CAGTCTCATC CTCTACTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667306	NES09035278	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306369					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667306	NES09035278	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879241 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	1191 bp upstream
Tssr601	transcription start site region 601	1180 bp upstream
Tssr602	transcription start site region 602	1717 bp downstream
Tssr19429	transcription start site region 19429	1463 bp downstream
Tssr19430	transcription start site region 19430	1353 bp downstream
Tssr19431	transcription start site region 19431	1269 bp downstream
Tssr19432	transcription start site region 19432	1186 bp downstream
Tssr19433	transcription start site region 19433	596 bp downstream
Tssr19434	transcription start site region 19434	552 bp downstream
Tssr19435	transcription start site region 19435	409 bp upstream
Tssr19436	transcription start site region 19436	790 bp upstream
Tssr19437	transcription start site region 19437	1525 bp upstream
Tssr19438	transcription start site region 19438	1608 bp upstream
Tssr19439	transcription start site region 19439	1673 bp upstream
Tssr25660	transcription start site region 25660	1442 bp upstream
Tssr25661	transcription start site region 25661	1421 bp upstream
Tssr25662	transcription start site region 25662	1318 bp upstream
Tssr25663	transcription start site region 25663	1292 bp upstream
Tssr25664	transcription start site region 25664	1251 bp upstream
Tssr25665	transcription start site region 25665	1143 bp upstream
Tssr25666	transcription start site region 25666	589 bp upstream
Tssr25667	transcription start site region 25667	546 bp upstream
Tssr25668	transcription start site region 25668	519 bp upstream
Tssr25669	transcription start site region 25669	456 bp upstream
Tssr25670	transcription start site region 25670	441 bp downstream
Tssr25671	transcription start site region 25671	484 bp downstream
Tssr25672	transcription start site region 25672	553 bp downstream
Tssr25673	transcription start site region 25673	588 bp downstream
Tssr25674	transcription start site region 25674	792 bp downstream
Tssr25675	transcription start site region 25675	840 bp downstream
Tssr25676	transcription start site region 25676	877 bp downstream
Tssr25677	transcription start site region 25677	904 bp downstream
Tssr25678	transcription start site region 25678	1576 bp downstream
Tssr25679	transcription start site region 25679	1585 bp downstream
Tssr25680	transcription start site region 25680	1598 bp downstream
Tssr25681	transcription start site region 25681	1645 bp downstream
Tssr25682	transcription start site region 25682	1727 bp downstream
Tssr25683	transcription start site region 25683	1734 bp downstream
Tssr25684	transcription start site region 25684	1825 bp downstream